purpose of secondary antibody in western blot

Sodium dodecyl sulfate (SDS) is a potent anionic detergent that coats denatured proteins with an equal anion-to-mass ratio this masks proteins' charge, shape, and size characteristics and renders them solely a function of molecular weight. Glycerol adds density to samples, so they drift into the loading wells.īromophenol blue (BPB) is a nonreactive reagent that serves as a dye front for electrophoresis. Laemmli buffer (60 mM Tris-HCl pH 6.8 20% glycerol 2% SDS 4% beta-mercaptoethanol 0.01% bromophenol blue) is unique to western blot sample preparation as each reagent is purposeful for SDS-PAGE. Therefore, a western blot sample always has a 1-to-1 volume ratio of normalized protein and Laemmli buffer. Protein extract is normalized with cell-lysis buffer to the desired protein concentration, and an equal volume of Laemmli (sample) buffer is added. Īll western blot samples have three elements: protein extract, cell lysis buffer, and Laemmli (sample) buffer. Thus, by running this assay with known protein standards, a linear regression standard curve is generated to calculate unknown protein extract concentrations in the sample. In brief, the dye Coomassie Brilliant Blue G-250 complexes with proteins to change color, and this absorbance shift gets recorded by a spectrophotometer. Protein concentration is quantifiable by conducting a Bradford assay, a colorimetric protein assay that exploits the interaction of a dye with a protein. Intuitively, this is imperative for a valid experiment, as unequal proteins per lane can skew the analysis. There must be an equal concentration of proteins per western blot sample. Collectively, this information underscores the need to tailor protein extraction to the sample type and the target protein. PPIs are used to maintain the structure and phosphorylation status of the target protein from the activity of endogenous phosphatases upon cell lysis and exogenous phosphatases in the lysis microenvironment. As such, gentle buffers without detergents are required. For example, radioimmunoprecipitation assay buffer (RIPA) is more adept for nuclear and mitochondrial proteins.Īlthough rare, some antibodies will not be able to detect denatured samples. Furthermore, the cell lysis buffer used in extraction should align with the target protein cellular localization. For example, most tissue preparation is by homogenization or sonication however, osmotic shock or detergent lysis is more suited for easily lysed cells such as erythrocytes or cultured cells. There are numerous extraction methods, and proper selection is determined by the sample type. Western blot samples are first prepared by protein extraction with specialized cell lysis buffers and protease and phosphatase inhibitors (PPIs). Proper sample preparation for subsequent electrophoresis is crucial for downstream analysis. The principles of western blotting are equal loading of proteins, separation of proteins by molecular weight, electrophoretic transfer to a suitable membrane, and probing of antibodies. It is no longer being maintained up to date. This article remains for historical purposes and use in laboratories that still use this test. The Western Blot test is no longer recommended for use by the CDC. Quantifying bands on a western blot by densitometry allows a researcher to quantitatively compare samples (e.g., a treatment or time effect). When such probes are used, the detection limits can be 10 to 100 times lower than when direct immunoprecipitation and staining of proteins are conducted. Once the proteins are in the membrane, they can be detected using antibodies labeled with probes, such as radioactive isotopes or enzymes. It involves separating the individual proteins by polyacrylamide gel electrophoresis and then transferring or blotting onto an overlying strip of nitrocellulose or nylon membrane by electro-blotting. Western blotting separates, detects, and identifies one or more proteins in a complex mixture. Burnette in 1981 after the eponymous Southern blot for DNA and the consequent coinage of the northern blot in 1977 for RNA. The name ‘western’ blot was first coined by Dr.

Purpose of secondary antibody in western blot